Our people

Dr Johannes U Mayer

Dr Johannes Mayer is a Postdoctoral Research Fellow in the Malaghan Institute’s Immune Cell Biology programme, led by Professor Franca Ronchese.

During his student life Dr Mayer has been involved in various research projects in Germany, France and the US but was most fascinated by the complexity of the immune system. He thus decided to focus his scientific career on studying the intestinal immune system and parasitic immune responses and received his PhD in the UK in 2017.

Read more about his research here.

Research interests

As an experimental immunologist I am deeply rooted in in vivo mouse models, which I believe are the only way to understand the complex interactions of the immune system. To assess how the immune system changes during infection I use molecular approaches to understand the expression levels of genes and flow cytometry to look at cell populations and protein expression. As part of my PhD I have also developed surgical techniques to understand how intestinal immune responses against parasites develop.

Research group

Immune Cell Biology
Immune Cell Biology Programme Leader: Professor Franca Ronchese
Senior Research Fellow: Dr Olivier Lamiable
Postdoctoral Research Fellows: Dr Johannes Mayer
Dr Luis Munoz-Erazo
International Research Fellow: Dr Kerry Hilligan
Senior Research Officers: Marie Sophie-Fabre
Shiau-Choot Tang
Evelyn Hyde
Dr Jianping (Mark) Yang
Research Officer: Abbie Larson
PhD Student: Greta Webb

Research projects

I am pursuing several different projects here at the Malaghan Institute, which are all equally exciting. One aspect is to understand the migration of antigen presenting cells and how they transport antigen in different immune scenarios. For this we imported photoconvertible mice, which can be locally ‘switched’ from green fluorescence to red, allowing us to track cells and observe their migration. 

Another project I am working on is to understand the role of chemokines in Th2 scenarios. Chemokines have long been known to attract T cells to sites of inflammation, but there is accumulating evidence that this might not be their only role. I therefore want to understand if certain chemokines have a role beyond attracting T cells during Th2 immune responses.

I am very passionate about my science and hope that it one day leads to a radical shift in how we understand the immune system. Science is constantly in motion and our understanding of the immune system constantly evolves. It is therefore key to question current beliefs and paradigms and constantly develop and test new and refined hypotheses.



Bosteels C, Neyt K, Vanheerswynghels M, van Helden MJ, Sichien D, Debeuf N, De Prijck S, Bosteels V, Vandamme N, Martens L, Saeys Y, Louagie E, Lesage M, Williams DL, Tang SC, Mayer JU, Ronchese F, Scott CL, Hammad H, Guilliams M, Lambrecht BN (2020). Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection. Immunity. S1074-7613(20)30163-1.

Ronchese F, Hilligan KL, Mayer JU (2020). Dendritic Cells and the Skin Environment. Curr Opin Immunol. 64:56-62.

Ferrer-Font L, Mayer JU, Old S, Hermans IF, Irish J, Price KM (2020). High-Dimensional Data Analysis Algorithms Yield Comparable Results for Mass Cytometry and Spectral Flow Cytometry Data. Cytometry A.

Giladi A, Cohen M, Medaglia C, Baran Y, Li B, Zada M, Bost P, Blecher-Gonen R, Salame TM, Mayer JU, David E, Ronchese F, Tanay A, Amit I (2020). Dissecting cellular crosstalk by sequencing physically interacting cells. Nat Biotechnol. 38(5):629-637 

Ferrer-Font L, Pellefigues C, Mayer JU, Small SJ, Jaimes MC, Price KM (2020). Panel Design and Optimization for High-Dimensional Immunophenotyping Assays Using Spectral Flow Cytometry. Curr Protoc Cytom. 92(1):e70 

Ferrer-Font L, Mehta P, Harmos P, Schmidt AJ, Chappell S, Price KM, Hermans IF, Ronchese F, le Gros G, Mayer JU (2020). High-dimensional analysis of intestinal immune cells during helminth infection. Elife. 9:e51678 


Schmidt AJ, Mayer JU, Wallace PK, Ronchese F, Price KM (2019). Simultaneous Polychromatic Immunofluorescent Staining of Tissue Sections and Consecutive Imaging of up to Seven Parameters by Standard Confocal Microscopy. Curr Protoc Cytom. 91(1) 

Mayer JU (2020). Commentary: Spatiotemporal Modeling of the Key Migratory Events During the Initiation of Adaptive Immunity. Front Immunol. 10:2311

Blecher-Gonen R, Bost P, Hilligan KL, David E, Salame TM, Roussel E, Connor LM, Mayer JU, Bahar Halpern K, Tóth B, Itzkovitz S, Schwikowski B, Ronchese F, Amit I (2019) Single-Cell Analysis of Diverse Pathogen Responses Defines a Molecular Roadmap for Generating Antigen-Specific Immunity. Cell Systems 8(2):109-121.e6


Mayer JU, Demiri M, Agace WW, MacDonald AS, Svensson-Frej M, Milling SW. 2017. Different populations of CD11b+ dendritic cells drive Th2 responses in the small intestine and colon. Nat Commun. 

Schridde A, Bain CC, Mayer JU, Montgomery J, Pollet E, Denecke B, Milling SW, Jenkins SJ, Dalod M, Henri S, Malissen B, Pabst O, Mcl Mowat A. 2017. Tissue-specific differentiation of colonic macrophages requires TGFβ receptor-mediated signaling. Mucosal Immunol.